GenoAnnot-ProteoAnnot

For comprehensive annotation 

Save time and effort in your annotation work

Easily integrate your own proprietary genomes

Import and work with genomes in FASTA, GenBank and EMBL formats

Map an ensemble of sequences on a reference sequence, visualize these results simultaneously on multiple, linked maps

• If you have several strains of a bacteria, visualize (see) all of them at the same time on different, but connected maps
• Compare linked maps for differential analysis

Find specific coding regions and assemble contigs to obtain a complete sequence

• predict or confirm coding sequences to obtain more information about specific zones
• assemble contigs
• predict RNA location and structure
• predict Pfam protein domains from translated DNA sequences or from polypeptide sequences (see illustration below), using the hmmpfam method developed by HMMER
• analyze polypeptide sequences to find transmembrane regions, antigenic sites and
• predict 2D secondary structures of polypeptide sequences (based upon EMBOSS package)
  
• Predict protein functions and enzymatic activity (EC profiles)
• Find genomic patterns 

GenoAnnot-ProteoAnnot contains several BLAST functionalities including BlastX and BlastP

NEW!  Find protein domains using integrated Pfam task

The ProteoAnnot MapViewer
showing results of multiple protein prediction tasks, including Pfam domains, 
secondary structures, and antigenic sites 

GenoAnnot-ProteoAnnot, like all IOGMA® modules, is graphically based with a consistent user interface for ease of use.  Though powerful, it is easy to learn.