GenoAnnot-ProteoAnnot

Your integrated annotation pipeline. 

Simplify, automate and accelerate your nucleic and proteic annotation using Genostar’s streamlined pipeline. GenoAnnot-ProteoAnnot connects and integrates the many methods and tasks necessary for rapid, in-depth annotation and provides you with user-friendly visualizers and tools for sequence manipulation. Our versatile design automatically handles different data formats and leaves you free to concentrate on your research.

With GenoAnnot-ProteoAnnot you can easily annotate complete or partial sequences, identify specific coding regions, transfer annotations, and map contigs on a reference sequence to assemble your complete sequence. Focus on and explore specific regions in depth. Automate your standard annotation procedures. 

Identify specific regions and transfer annotations

                                                             Compute SNPs and DIPS, visualize results

Features 

• Go beyond ORF finding. Predict the full set of coding sequences (CDS) on your genomes or contigs:
  • GenoAnnot makes use of an Hidden Markov Method-derived algorithm that identifies, qualifies and validates coding sequences with speed and precision 

• Find regions specific to a single strain or present in multiple strains

• Assemble contigs to accurately obtain a complete sequence
• Predict RNA location and structure
• Predict Pfam domains from translated DNA sequences or from polypeptide sequences
• Find transmembrane regions, antigenic sites and predict 2D secondary structures of polypeptide sequences (Based on the EMBOSS  package)
• Take advantage of Gene Ontology inferences

• Find genomic patterns
• Compute SNPs & DIPs
• Detect frameshifts
• Compare multiple strains and visualize them simultaneously on different, connected maps
• Use synchronize and zoom features to link different maps and focus on areas of interest between organisms or strains
• Show genomic features on maps and identify shared and unique features
• Automatically organize contig and sequence feature data in tables
• Simultaneously visualize & explore chromosomes and plasmids on circular and linear maps. 

GenoAnnot-ProteoAnnot contains  BLAST functionalities including BlastX and BlastP

                       Find protein domains using our integrated Pfam task

 ProteoAnnot MapViewer showing results of multiple protein prediction tasks, including Pfam domains, secondary structures, and antigenic sites